MmuEX0041328 @ mm10
Exon Skipping
Gene
ENSMUSG00000016763 | Scube1
Description
signal peptide, CUB domain, EGF-like 1 [Source:MGI Symbol;Acc:MGI:1890616]
Coordinates
chr15:83638704-83677040:-
Coord C1 exon
chr15:83676906-83677040
Coord A exon
chr15:83659026-83659151
Coord C2 exon
chr15:83638704-83638820
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTGTCTGTCTCTCTTCTCAGAGG
3' ss Score
11.56
5' ss Seq
CACGTAGGT
5' ss Score
6.85
Exon sequences
Seq C1 exon
ATGTAGATGAGTGTCAAGACAACAACGGCGGCTGCCAGCAGATCTGCGTCAATGCCATGGGCAGCTATGAATGCCAGTGCCACAGCGGCTTTTTTCTCAGTGACAACCAACACACCTGCATACACCGCTCCAATG
Seq A exon
AGGGTATGAACTGCATGAACAAAGACCATGGCTGTGCCCACATCTGCCGGGAGACGCCCAAAGGTGGGGTAGCCTGTGACTGCAGGCCCGGCTTTGACCTTGCCCAAAACCAGAAGGACTGCACAC
Seq C2 exon
AGACATGTGCAGTGAACAACGGAGGCTGTGACCGGACGTGTAAGGACACTGCCACTGGCGTGCGGTGCAGCTGCCCGGTTGGATTCACGCTGCAGCCAGATGGAAAGACATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016763_MULTIEX1-1/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(12.5=6.5),PF146701=FXa_inhibition=WD(100=78.3)
A:
PF146701=FXa_inhibition=WD(100=86.0)
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGTCAAGACAACAACGGC
R:
TTGCATGTCTTTCCATCTGGCT
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types