GgaEX6003038 @ galGal4
Exon Skipping
Gene
ENSGALG00000014178 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr1:68801349-68861667:-
Coord C1 exon
chr1:68861533-68861667
Coord A exon
chr1:68808674-68808799
Coord C2 exon
chr1:68801349-68801465
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTTCTTTTACAGAGG
3' ss Score
11.89
5' ss Seq
AATGTAGGT
5' ss Score
5.12
Exon sequences
Seq C1 exon
ACGTTGATGAGTGTCAGGATAACAATGGAGGGTGCCAGCAGATTTGTGTAAATACTATGGGCAGCTATGAATGTCAGTGCAAAGAAGGCTTTTTTCTGAGTGATAACCAGCACACCTGCATTCATCGCTCCATTG
Seq A exon
AGGGTATGAACTGTATGAACAAAGATCATGGGTGTGCACACATCTGTCGGGAGACGCCCAAAGGTGGGGTTGCCTGTGAATGTAGGCCTGGCTTTGAACTTGCCAAAAACCAGAAGGACTGCAAAT
Seq C2 exon
TAACCTGTAACTATGGGAATGGAGGCTGCCAGCACACCTGTGATGACACTGATACTGGTCCTGTGTGTGGTTGTCATCAGAAGTATGCCCTGCATTCAGATGGACGAACCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014178-'4-7,'4-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(12.5=6.5),PF146701=FXa_inhibition=WD(100=78.3)
A:
PF146701=FXa_inhibition=WD(100=86.0)
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCAGGATAACAATGGAGGGT
R:
CAATGCAGGTTCGTCCATCTGA
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]