RnoEX0078729 @ rn6
Exon Skipping
Gene
ENSRNOG00000010617 | Scube1
Description
signal peptide, CUB domain and EGF like domain containing 1 [Source:RGD Symbol;Acc:1309015]
Coordinates
chr7:124534530-124574295:-
Coord C1 exon
chr7:124574161-124574295
Coord A exon
chr7:124555124-124555249
Coord C2 exon
chr7:124534530-124534646
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTGTCTGTGTCTCTTCTCAGAGG
3' ss Score
10.64
5' ss Seq
CACGTAGGT
5' ss Score
6.85
Exon sequences
Seq C1 exon
ATGTAGATGAGTGCCAAGACAACAACGGTGGCTGCCAGCAGATCTGTGTCAATGCCATGGGCAGCTATGAGTGCCAGTGCCACAGCGGCTTTTTTCTCAGTGACAACCAACACACCTGCATACACCGCTCCAACG
Seq A exon
AGGGTATGAACTGCATGAACAAAGACCATGGCTGTGCCCACATCTGCCGGGAGACGCCCAAAGGTGGGGTAGCCTGTGACTGCAGGCCCGGCTTTGACCTTGCCCAAAACCAGAAGGACTGCACAC
Seq C2 exon
AGACGTGTGCGGTGAACAACGGAGGCTGTGACCGGACGTGTAAGGACACTGCCACCGGCGTGAGATGCAGCTGCCCAGTTGGATTCACGCTACAGCCGGATGGAAAGACATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010617_MULTIEX1-3/5=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(12.5=6.5),PF146701=FXa_inhibition=WD(100=78.3)
A:
PF146701=FXa_inhibition=WD(100=86.0)
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGCCAAGACAACAACGG
R:
TTGCATGTCTTTCCATCCGGC
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]