BtaEX6028841 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:102073592-102087140:-
Coord C1 exon
chr4:102087080-102087140
Coord A exon
chr4:102075402-102075515
Coord C2 exon
chr4:102073592-102073729
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGGCCCCCAAATGTCTGTAGGTG
3' ss Score
6.08
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
GCTTGAGTTGTATAGGAAGGTACCAAACCTGCGGATTCTGGCCTGTGGCGGGGATGGAACG
Seq A exon
GTGGGCTGGATCCTTTCCATTCTGGATGAACTGCAGCTGAGCCCTCAGCCTCCTGTCGGGGTCCTTCCTCTGGGGACTGGGAATGACCTGGCTCGGACTCTCAACTGGGGAGGG
Seq C2 exon
GGCTACACTGATGAGCCTGTTTCTAAGATCCTTTGCCAAGTAGAAGATGGGACGATTGTACAGCTGGATCGCTGGAATCTCCACGTGGAAAGAAACCCAGACTTGCCTCCTGAAGAACTGGAAGATGGCGTGTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.022
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(16.0=100)
A:
PF0078119=DAGK_cat=FE(29.6=100)
C2:
PF0078119=DAGK_cat=PD(19.2=52.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGAGTTGTATAGGAAGGTACCA
R:
ACACACGCCATCTTCCAGTTC
Band lengths:
196-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]