RnoEX6013167 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64564537-64577914:-
Coord C1 exon
chr4:64577854-64577914
Coord A exon
chr4:64566214-64566327
Coord C2 exon
chr4:64564537-64564674
Length
114 bp
Sequences
Splice sites
3' ss Seq
GGTCCCCAATGTGTCTGTAGGTG
3' ss Score
7.63
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
GCTGGAGCTGTACAGGAAGGTACCAAATCTGCGAATTCTGGCCTGCGGTGGGGATGGAACG
Seq A exon
GTGGGCTGGATCCTCTCCATCCTGGACGAGCTGCAGCTGAGCCCACAGCCTCCTGTGGGGGTGCTTCCGCTGGGGACTGGGAACGACCTGGCTCGGACGCTCAACTGGGGAGGG
Seq C2 exon
GGTTACACCGATGAGCCTGTTTCTAAGATCCTGTGCCAGGTGGAAGACGGGACCATTGTACAGTTGGATCGCTGGAACCTCCATGTGGAGAGAAACCCAGACTTGCCACCTGAAGAACTTGAAGATGGCGTGTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705-'24-22,'24-21,25-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.026
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(16.0=100)
A:
PF0078119=DAGK_cat=FE(29.6=100)
C2:
PF0078119=DAGK_cat=PD(19.2=52.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGCTGTACAGGAAGGT
R:
ACACACGCCATCTTCAAGTTCT
Band lengths:
196-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]