MmuEX0014427 @ mm9
Exon Skipping
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:36982863-36998180:-
Coord C1 exon
chr6:36998120-36998180
Coord A exon
chr6:36984584-36984697
Coord C2 exon
chr6:36982863-36983000
Length
114 bp
Sequences
Splice sites
3' ss Seq
GGCCCCCAATGTGTCTGTAGGTG
3' ss Score
7.86
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
GCTGGAGATGTACAGGAAGGTACCAAATCTGAGAATTCTGGCCTGCGGTGGGGATGGAACG
Seq A exon
GTGGGCTGGATCCTCTCCATCCTGGACGAGCTGCAGCTGAGCCCACAGCCTCCTGTGGGGGTGCTTCCACTGGGGACTGGGAATGACCTGGCTCGGACGCTCAACTGGGGAGGG
Seq C2 exon
GGTTACACCGATGAGCCTGTTTCTAAGATCCTGTGCCAGGTGGAAGATGGGACCATTGTACAGTTGGATCGCTGGAACCTCCACGTAGAGAGAAACCCAGACCTGCCGCCCGAAGAACTTGAAGATGGCGTGTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665-'16-18,'16-17,18-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.022
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(16.0=100)
A:
PF0078119=DAGK_cat=FE(29.6=100)
C2:
PF0078119=DAGK_cat=PD(19.2=52.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGATGTACAGGAAGGT
R:
ACACACGCCATCTTCAAGTTCT
Band lengths:
196-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: