HsaEX0019447 @ hg38
Exon Skipping
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr7:137585209-137597907:-
Coord C1 exon
chr7:137597847-137597907
Coord A exon
chr7:137587097-137587210
Coord C2 exon
chr7:137585209-137585346
Length
114 bp
Sequences
Splice sites
3' ss Seq
GGCCCCCGATACGCCTGTAGGTG
3' ss Score
5.51
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
GCTTGAATTGTATAGGAAAGTACCAAATCTGCGAATTCTGGCCTGTGGTGGGGATGGAACG
Seq A exon
GTGGGCTGGATCCTTTCCATCCTGGATGAACTGCAGCTGAGCCCTCAGCCTCCTGTGGGGGTCCTTCCTCTGGGGACTGGGAATGACCTGGCTCGAACTCTCAACTGGGGAGGG
Seq C2 exon
GGCTACACTGATGAACCTGTTTCTAAGATCCTGTGTCAAGTGGAAGATGGGACAGTTGTACAGCTAGATCGCTGGAACCTCCATGTGGAAAGAAACCCCGACTTGCCTCCAGAAGAACTTGAAGATGGCGTATGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680_MULTIEX1-8/8=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.036
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(16.0=100)
A:
PF0078119=DAGK_cat=FE(29.6=100)
C2:
PF0078119=DAGK_cat=PD(19.2=52.2)
Main Skipping Isoform:
ENST00000288490fB13707
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGAATTGTATAGGAAAGTACCA
R:
ATACGCCATCTTCAAGTTCTTCTGG
Band lengths:
194-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development