GgaEX1019500 @ galGal4
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr1:57699288-57703638:+
Coord C1 exon
chr1:57699288-57699348
Coord A exon
chr1:57702799-57702912
Coord C2 exon
chr1:57703501-57703638
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTTCTGGTTTTATAGGTT
3' ss Score
9.71
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
GCTGGAGCTGTACAGAAAAGTGCCAAACCTGCGGATCCTGGCCTGTGGCGGGGATGGAACG
Seq A exon
GTTGGCTGGATCCTCTCTATCCTAGATGAGCTGCAACTCACTCCTCAGCCTCCTGTGGCTGTCCTTCCACTTGGCACTGGGAATGACCTTGCCCGCACCCTCAACTGGGGTGGG
Seq C2 exon
GGTTACACAGATGAGCCTGTGTCCAAGATCTTGTGTCATGTAGAAGATGGGACCATTGTCCAGCTGGACCGATGGAATCTACAAGTTGAGCGCAACCCAGATTTGCCACAGGATGAGCTGGAAGATGGGTCACGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.196
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(16.0=100)
A:
PF0078119=DAGK_cat=FE(29.6=100)
C2:
PF0078119=DAGK_cat=PD(19.2=52.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGTACAGAAAAGTGCCA
R:
TACGTGACCCATCTTCCAGCT
Band lengths:
194-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]