HsaEX0019447 @ hg19
Exon Skipping
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:2855]
Coordinates
chr7:137269955-137282653:-
Coord C1 exon
chr7:137282593-137282653
Coord A exon
chr7:137271843-137271956
Coord C2 exon
chr7:137269955-137270092
Length
114 bp
Sequences
Splice sites
3' ss Seq
GGCCCCCGATACGCCTGTAGGTG
3' ss Score
5.51
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
GCTTGAATTGTATAGGAAAGTACCAAATCTGCGAATTCTGGCCTGTGGTGGGGATGGAACG
Seq A exon
GTGGGCTGGATCCTTTCCATCCTGGATGAACTGCAGCTGAGCCCTCAGCCTCCTGTGGGGGTCCTTCCTCTGGGGACTGGGAATGACCTGGCTCGAACTCTCAACTGGGGAGGG
Seq C2 exon
GGCTACACTGATGAACCTGTTTCTAAGATCCTGTGTCAAGTGGAAGATGGGACAGTTGTACAGCTAGATCGCTGGAACCTCCATGTGGAAAGAAACCCCGACTTGCCTCCAGAAGAACTTGAAGATGGCGTATGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680_MULTIEX1-11/11=10-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.022
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(16.0=100)
A:
PF0078119=DAGK_cat=FE(29.6=100)
C2:
PF0078119=DAGK_cat=PD(19.2=52.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGAATTGTATAGGAAAGTACCA
R:
ATACGCCATCTTCAAGTTCTTCTGG
Band lengths:
194-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)