BtaEX6029975 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13433477-13448724:-
Coord C1 exon
chr6:13448637-13448724
Coord A exon
chr6:13447825-13447928
Coord C2 exon
chr6:13433477-13433701
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCAGTGTTCTTTGTGTTTAGGTG
3' ss Score
9.8
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
TTCCGACAGGTCTCACACCCTGAGCCATGCCTCGTACCTGAGGGACAGTGCCATGATCGACGACGCAGTTGTGATCCCCAGTCACCAG
Seq A exon
GTGACAACTCTAGCCAAGGAGGCAGAAAGGAATTCTTATCGTCTAAGCTGGGGCACTGAGAACTTGGACAACGTGGCTCTTTCTTCCAGCCCTATTCATTCAGG
Seq C2 exon
TTTCCTGGTTAGTTTTATGGTGGATGCCCGAGGTGGTGCTATGCGAGGATGCAGACACAACGGGCTCCGCATCATTATTCCGCCCCGGAAATGTACCGCCCCAACACGAGTCACCTGCCGACTGGTCAAACGCCATAGACTGGCGACAATGCCTCCAATGGTGGAAGGAGAGGGCCTGGCCAGTCGCCTGATTGAAGTTGGACCTTCTGGTGCTCAGTTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392-'68-72,'68-67,69-72=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.098 C2=0.002
Domain overlap (PFAM):
C1:
NO
A:
PF0079115=ZU5=PU(1.0=2.9)
C2:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGTGATCCCCAGTCACCA
R:
AGGAACTGAGCACCAGAAGGT
Band lengths:
244-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]