DreEX6007828 @ danRer10
Exon Skipping
Gene
ENSDARG00000043313 | ank2b
Description
ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
Coordinates
chr7:57646539-57651740:-
Coord C1 exon
chr7:57651674-57651740
Coord A exon
chr7:57650205-57650296
Coord C2 exon
chr7:57646539-57646763
Length
92 bp
Sequences
Splice sites
3' ss Seq
AATGGCTTTCTTCATTCCAGGTG
3' ss Score
10.56
5' ss Seq
TGGGTATGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
TTTGGACAGATCCTACACTCCCACCCACCAGAGTTACTACTCAAAACATTATGGAATTATGGAGGAT
Seq A exon
GTGTCTTCTCTTGGAAGAGAAAATGAAAAGGACTCATGGGAAACTGAAAACTTGGACAACATAGCACTTTCCTCAAGTCCTGCTCATTCTGG
Seq C2 exon
TTTCTTAGTCAGCTTCATGGTGGATGCTCGAGGAGGTGCCATGCGAGGATGCCGCCACAATGGTCTGCGGCTGATCATTCCACCACGGAAGTGCAGCGCCCCTACTAGAGTCACCTGTAGACTGGTCAAAAGGCACCGACTGGCAACAATGCCTCCAATGGTAGAAGGTGACGGTCTAGCCAGCAGGCTGATTGAGGTCGGACCTTCTGGAGCTCAGTTCCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043313-'44-40,'44-38,46-40=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=0.565 C2=0.053
Domain overlap (PFAM):
C1:
NO
A:
PF0079115=ZU5=PU(1.2=3.2)
C2:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCCCACCCACCAGAGTTA
R:
CAGGTGACTCTAGTAGGGGCG
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]