GgaEX6035118 @ galGal4
Exon Skipping
Gene
ENSGALG00000012044 | chAnk2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NG08]
Coordinates
chr4:56376234-56389007:-
Coord C1 exon
chr4:56388905-56389007
Coord A exon
chr4:56388198-56388301
Coord C2 exon
chr4:56376234-56376458
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTTTGTTTACCAAGGTA
3' ss Score
6.89
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CCTGCGATCCTTCAGTTCAGACAGGTCTCACACACTGAGCCATGCCTCCTACCTGAGGGACAGTGCCATGATTGACGACACTGTTGTAATCCCTAGCCAGCAG
Seq A exon
GTAACTACTCTGGCCAAAGAAGCAGAAAGGAATTCATATCGCTTAAGCTGGGGGCCTGAAAACTTGGACAATGTGGCTCTTTCTTCCAGCCCTATTCACTCAGG
Seq C2 exon
CTTCCTAGTTAGTTTCATGGTGGATGCTCGTGGGGGTGCCATGAGAGGCTGCAGACATAACGGACTGCGGATTATTATTCCTCCACGGAAATGCACTGCTCCAACACGAGTGACTTGCCGCTTGGTGAAACGTCACAGACTGGCCACCATGCCTCCCATGGTGGAAGGAGAAGGCCTGGCCAGCCGTCTGATCGAAGTGGGACCATCTGGGGCCCAGTTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'46-52,'46-48,47-52=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=0.131 C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
PF0079115=ZU5=PU(1.2=2.9)
C2:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCACACACTGAGCCATG
R:
CCTTCTCCTTCCACCATGGGA
Band lengths:
254-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]