MmuEX6073967 @ mm9
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126667856-126679865:-
Coord C1 exon
chr3:126679763-126679865
Coord A exon
chr3:126678969-126679072
Coord C2 exon
chr3:126667856-126668080
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCACTGTTCTTTGTGTGTAGGTG
3' ss Score
10.22
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CCTCCGGTCCTTCAGTTCCGACAGGTCTCACACTCTGAGCCATGCATCGTACCTGAGGGACAGTGCCATGATTGACGACACGGTTGTGATCCCCAGCCACCAG
Seq A exon
GTGTCTGCGCTAGCCAAGGAGGCAGAAAGGAATTCTTATCGTCTGAGCTGGGGCACTGAGAACTTAGACAACGTGGCTCTTTCTTCCAGTCCTATTCATTCAGG
Seq C2 exon
TTTCCTAGTCAGTTTTATGGTGGATGCCCGTGGTGGTGCCATGCGAGGATGCAGACACAATGGACTCAGAATCATTATCCCACCTCGGAAATGCACAGCCCCAACTCGCGTCACCTGCCGCCTTGTGAAACGCCATCGACTGGCAACAATGCCGCCCATGGTGGAAGGAGAAGGCCTGGCCAGCCGCCTGATTGAAGTCGGACCTTCGGGAGCTCAGTTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-'39-40,'39-37,40-40=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.067 C2=0.006
Domain overlap (PFAM):
C1:
NO
A:
PF0079115=ZU5=PU(1.0=2.9)
C2:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCACACTCTGAGCCATGC
R:
AGGCCTTCTCCTTCCACCATG
Band lengths:
256-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: