GgaEX6035118 @ galGal3
Exon Skipping
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58331409-58344183:-
Coord C1 exon
chr4:58344081-58344183
Coord A exon
chr4:58343374-58343477
Coord C2 exon
chr4:58331409-58331633
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTTTGTTTACCAAGGTA
3' ss Score
6.89
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CCTGCGATCCTTCAGTTCAGACAGGTCTCACACACTGAGCCATGCCTCCTACCTGAGGGACAGTGCCATGATTGACGACACTGTTGTAATCCCTAGCCAGCAG
Seq A exon
GTAACTACTCTGGCCAAAGAAGCAGAAAGGAATTCATATCGCTTAAGCTGGGGGCCTGAAAACTTGGACAATGTGGCTCTTTCTTCCAGCCCTATTCACTCAGG
Seq C2 exon
CTTCCTAGTTAGTTTCATGGTGGATGCTCGTGGGGGTGCCATGAGAGGCTGCAGACATAACGGACTGCGGATTATTATTCCTCCACGGAAATGCACTGCTCCAACACGAGTGACTTGCCGCTTGGTGAAACGTCACAGACTGGCCACCATGCCTCCCATGGTGGAAGGAGAAGGCCTGGCCAGCCGTCTGATCGAAGTGGGACCATCTGGGGCCCAGTTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'35-44,'35-40,36-44=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.187 A=0.083 C2=0.001
Domain overlap (PFAM):
C1:
NO
A:
PF0079115=ZU5=PU(1.0=2.9)
C2:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCACACACTGAGCCATG
R:
CCTTCTCCTTCCACCATGGGA
Band lengths:
254-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]