RnoEX6011468 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231269728-231281315:-
Coord C1 exon
chr2:231281213-231281315
Coord A exon
chr2:231280327-231280430
Coord C2 exon
chr2:231269728-231269952
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCACTGTTCTTTGTGTGTAGGTG
3' ss Score
10.22
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CCTCCGGTCCTTCAGTTCCGACAGGTCTCACACTCTGAGCCACGCATCGTACCTGAGGGACAGTGCCATGATCGACGACACGGTTGTGATCCCCAGCCACCAG
Seq A exon
GTGTCAGCCCTAGCCAAGGAGGCAGAAAGGAATTCTTATCGTCTGAGCTGGGGCACCGAGAACTTAGACAACGTGGCTCTTTCTTCCAGTCCTATTCATTCAGG
Seq C2 exon
TTTCCTAGTCAGTTTTATGGTGGATGCCCGTGGTGGTGCCATGCGAGGGTGCAGACACAATGGGCTCAGAATCATTATCCCACCTCGGAAATGCACAGCCCCGACTCGAGTCACCTGCCGCCTTGTGAAACGCCACAGACTGGCGACGATGCCACCCATGGTGGAAGGAGAAGGCCTGGCCAGCCGCCTGATTGAAGTCGGACCTTCCGGAGCTCAGTTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076-'68-57,'68-53,69-57=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=0.086 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
PF0079115=ZU5=PU(1.0=2.9)
C2:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATGATCGACGACACGGTTGT
R:
AAGGTCCGACTTCAATCAGGC
Band lengths:
243-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]