DreEX6030706 @ danRer10
Exon Skipping
Gene
ENSDARG00000009026 | CR388002.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4G7]
Coordinates
chr1:13428801-13432680:+
Coord C1 exon
chr1:13428801-13428885
Coord A exon
chr1:13432237-13432337
Coord C2 exon
chr1:13432645-13432680
Length
101 bp
Sequences
Splice sites
3' ss Seq
TATTCTGATTGTGTTGTCAGGTG
3' ss Score
6.64
5' ss Seq
AGGGTTAGT
5' ss Score
5.02
Exon sequences
Seq C1 exon
GTCTCATGAAACCCCCAGTCATCTTGCTTACAGAGGTGAAGGAATTCTGATCGAAGACATGATCGCCAGCCACCAGATTAACAAG
Seq A exon
GTGTCTGCATTTCGAGAGCATGAGAAGGACTCGTATCGACTGAGCTGGGGTGCTGAACATCTGGATAATGTGGTGCTAACCAGCACTCTTCTGCAGTCAGG
Seq C2 exon
CCAGTCTACCCCATGCCTTGACCATGACAACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009026-'29-32,'29-31,36-32=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.310 A=0.000 C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079115=ZU5=PU(1.2=7.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACCCCCAGTCATCTTGC
R:
TGCTGTTGTCATGGTCAAGGC
Band lengths:
114-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]