BtaEX6030005 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13390083-13391024:-
Coord C1 exon
chr6:13390932-13391024
Coord A exon
chr6:13390359-13390442
Coord C2 exon
chr6:13390083-13390247
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTCTCAACTGTGTAGGGA
3' ss Score
8.02
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
GAGCTAACAGAGGAATTAGGTGAGCTGGAGGCCAGCTCAGATGAGGAGGCGATGGTAACAACCAGGGTTGTCCGCCGACGATTGATTATTCAG
Seq A exon
GGAGATGATATGCCTGACATACCCCCAGAAACAGTCACAGAAGAAGAATACATCGATGAGCATGGACACACCGTGGTAAAGAAG
Seq C2 exon
GTTACTAGGAAAATCATTAGGCGGTTCATCTCCTCTGACGGCACAGAGAAAGAGGAGATTACGATGCAGGGAGCACCACAGGATTCTATCAGCGTTGATGAAGGGGATGGTTATTCCAAAGTCATAAAGCGCATTGTATTGAAGAGTGACACCGAGCAGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392-'129-132,'129-131,131-132=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.464 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGATGAGGAGGCGATGGT
R:
AACCATCCCCTTCATCAACGC
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]