RnoEX6011484 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231232925-231236763:-
Coord C1 exon
chr2:231236475-231236763
Coord A exon
chr2:231233203-231233286
Coord C2 exon
chr2:231232925-231233089
Length
84 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTCCTACTGTTTAGGGA
3' ss Score
8.48
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGTGACCACACCAGGGGCAGAAGTAGAAGACACTCAGAAGGCCACAGTCATTCCTGACTCTCTTTGTAAGACTCCTGAGGACATCAGCACCCCTCCTGAGGAAGCAAAGCCTTGTCTCCAGACTCCAGTGGCTATCGAACATGCTTCTCCAATTGTCCAAGAACCTGAGGAGGCTTCTGAGCCCAAAGAGGAAAGTTCTCCAAGGAAAACCAGCCTGGTCATAGTGGAGTCAACAGACGACCAGCCTCAGGTCTTTGAAAAATTGGATGGTGACGCTGCTTTTCAAAAG
Seq A exon
GGAGACGATATGCCTGACATTCCCCCAGAGACAGTCACAGAGGAAGAATACGTCGACGAGAACGGGCACACTGTGGTGAAGAAG
Seq C2 exon
GTTACCCGGAAAATTATCAGGCGGTACGTATCCTCTGATGGCACAGAGAAGGAGGAGATTACCATGCAGGGAATGCCACAGGAGCCAGTCAACATTGAGGATGGGGACAGCTATTCCAAAGTGATAAAGCGTGTGGTATTGAAGAGTGACACCCAGCTGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076-'98-91,'98-89,100-91=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.835 C2=0.547
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAGTCAACAGACGACCA
R:
AGCTGTCCCCATCCTCAATGT
Band lengths:
179-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]