MmuEX6073981 @ mm10
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126929722-126933226:-
Coord C1 exon
chr3:126932938-126933226
Coord A exon
chr3:126929998-126930081
Coord C2 exon
chr3:126929722-126929886
Length
84 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTCTCACTCTTTAGGGA
3' ss Score
11.7
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGTAACAACACCAGGGGCAGAAGTGGAAGACCCTCAGAAGGCCACAGCCGTTCCTGACTCTCTCTGTAAGACTCCTGAGGACATCAGTACCCCTCCTGAGGGAACAAAGCCTTGTCTCCAGACCCCGGTGACTAGCGAACGTGGTTCTCCGATTGTGCAAGAACCTGAGGAGGCTTCCGAGCCCAAAGAGGAGAGTTCTCCAAGGAAAACTAGCCTGGTCATTGTTGAGTCAACAGACGACCAGTCTCAGGTCTTTGAAAGACTGGATGGTGATGCCGCTTTTCAAAAG
Seq A exon
GGAGACGATATGCCTGACATACCCCCAGAGACGGTCACAGAGGAAGAATATGTTGATGAGAATGGACACACCGTGGTGAAGAAG
Seq C2 exon
GTTACCCGGAAAATCATTAGGCGGTACGTTTCCTCTGATGGCACAGAGAAGGAGGAGGTTACCATGCAGGGAATGCCTCAGGAGCCAGTCAACATTGAGGATGGGGACAATTATTCCAAAGTGATAAAGCGCGTGGTATTGAAGAGTGACACCCAGCAGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-'110-125,'110-124,113-125
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.863 C2=0.673
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF046497=VlpA_repeat=PU(55.6=16.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAACCTGAGGAGGCTTC
R:
CATCAGAGGAAACGTACCGCC
Band lengths:
173-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types