DreEX6007840 @ danRer10
Exon Skipping
Gene
ENSDARG00000043313 | ank2b
Description
ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
Coordinates
chr7:57596147-57610982:-
Coord C1 exon
chr7:57610910-57610982
Coord A exon
chr7:57598232-57598315
Coord C2 exon
chr7:57596147-57596311
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTGTTGGTTGTCTTTTATAGGGT
3' ss Score
10.09
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGTGGTTGGAGACTCTACACACAGTTTTGAAATGGTTGGACTGAGGCAACAATTTCCAGGCACTATCAAGCAA
Seq A exon
GGTGACGACATGCCTGAAATTCCTCCTCAGACAGTGACAGAAGAGCAATACACTGACGAATATGGAAACATGGTGGTCAAAAAG
Seq C2 exon
ATAACAAGGAAAGTTATCCGCAAGTATGTGTCAGCAGATGGCGTAGAGAGAGAGGAAGTGATGTTGGAGGGCCCGCAGCAGGAAGCTGTCACTGTGGACGAAGCTGACAGTTTCTCTAAAGTGGTGAAGAGGACAGTGGTGCGGAGCGGAGGAGATCAGACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043313-'72-72,'72-71,76-72=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=0.673 C2=0.321
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSDART00000147287fB1177
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAACAATTTCCAGGCACT
R:
ACCACTGTCCTCTTCACCACT
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]