GgaEX0018082 @ galGal3
Exon Skipping
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58293749-58297774:-
Coord C1 exon
chr4:58297510-58297774
Coord A exon
chr4:58295525-58295608
Coord C2 exon
chr4:58293749-58293913
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTCTGTTCTTTGTCATACAGGCC
3' ss Score
8.74
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
TGTCACAACTCCAGGAACAGAGCAGAGGGCAGCAAGCGATACATCTGCACGCTTCAGTGCAACAAAGGAAGAGAGAGAAAAAACATCCCCACAGTCCCCATCATCTGCTCAGAGAGGTGGTTCTCCCATCATCCAAGAGCCTGAAGAGCTCCATCTCCATCAGGATGATCCGTCTCCAAGGAGAACTAGTCTAGTGATAGTGGAGTCAATTGATGAACAGCCAGAAAAGCTTGGAAGCGGCTATGAGGAGGAATCTTTAGAAAAG
Seq A exon
GCCGATAGTATGCCTGAAATGCCACCAGAAACAGTCACAGAAGAACAATACACAGATGAACATGGCCACACAGTGGTGAAGAAG
Seq C2 exon
GTCACTAGAAAGATCATCCGGCGATACGTTTCTCCAGATGGCACTGAAAAAGAAGATATCATTATGCAAGGAACACCACAAAAACCTGTCACAGTTGAAGAAGGAGACGGCTATTCCAAAGTTGTAAAACGAGTCGTGCTGAAGAGTGACAGTGAACAGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044_MULTIEX2-2/2=C1-C2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.955 C2=0.926
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGCTATGAGGAGGAATCT
R:
GTCACTCTTCAGCACGACTCG
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]