MmuEX6073981 @ mm9
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126632640-126636144:-
Coord C1 exon
chr3:126635856-126636144
Coord A exon
chr3:126632916-126632999
Coord C2 exon
chr3:126632640-126632804
Length
84 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTCTCACTCTTTAGGGA
3' ss Score
11.7
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGTAACAACACCAGGGGCAGAAGTGGAAGACCCTCAGAAGGCCACAGCCGTTCCTGACTCTCTCTGTAAGACTCCTGAGGACATCAGTACCCCTCCTGAGGGAACAAAGCCTTGTCTCCAGACCCCGGTGACTAGCGAACGTGGTTCTCCGATTGTGCAAGAACCTGAGGAGGCTTCCGAGCCCAAAGAGGAGAGTTCTCCAAGGAAAACTAGCCTGGTCATTGTTGAGTCAACAGACGACCAGTCTCAGGTCTTTGAAAGACTGGATGGTGATGCCGCTTTTCAAAAG
Seq A exon
GGAGACGATATGCCTGACATACCCCCAGAGACGGTCACAGAGGAAGAATATGTTGATGAGAATGGACACACCGTGGTGAAGAAG
Seq C2 exon
GTTACCCGGAAAATCATTAGGCGGTACGTTTCCTCTGATGGCACAGAGAAGGAGGAGGTTACCATGCAGGGAATGCCTCAGGAGCCAGTCAACATTGAGGATGGGGACAATTATTCCAAAGTGATAAAGCGCGTGGTATTGAAGAGTGACACCCAGCAGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-'62-61,'62-60,64-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.873 C2=0.701
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAACCTGAGGAGGCTTC
R:
CATCAGAGGAAACGTACCGCC
Band lengths:
173-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: