BtaEX6030645 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005108 | SLIT2
Description
slit homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11086]
Coordinates
chr6:41540509-41541918:+
Coord C1 exon
chr6:41540509-41540652
Coord A exon
chr6:41540765-41540928
Coord C2 exon
chr6:41541895-41541918
Length
164 bp
Sequences
Splice sites
3' ss Seq
TCTGTATGTGTTTCTGAAAGGCA
3' ss Score
5.18
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTACTGAATGCCAACAAGATAAACTGCCTCCGGGTAGATGCTTTTCAGGATCTGCACAACCTGAACCTTCTCTCCTTATATGACAACAAGCTTCAGACCATCGCCAAGGGGACCTTTTCACCTCTCCGGGCCATTCAAACCAT
Seq A exon
GCATTTGGCCCAGAACCCCTTTATTTGTGACTGCCATCTCAAGTGGCTGGCGGATTATCTCCATACCAACCCAATCGAGACCAGTGGTGCCCGCTGCACCAGTCCCCGGCGACTGGCAAACAAAAGAATCGGACAGATCAAAAGCAAGAAATTCCGTTGTTCAG
Seq C2 exon
CTAAAGAACAGTATTTCATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005108-'18-23,'18-22,19-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(78.7=100)
A:
PF138551=LRR_8=PD(11.5=12.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]