GgaEX7004025 @ galGal4
Exon Skipping
Gene
ENSGALG00000014419 | SLIT2
Description
slit homolog 2 protein precursor [Source:RefSeq peptide;Acc:NP_001254004]
Coordinates
chr4:74617091-74621949:-
Coord C1 exon
chr4:74621806-74621949
Coord A exon
chr4:74621515-74621678
Coord C2 exon
chr4:74617091-74617241
Length
164 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTCTCCATGAAAGGCA
3' ss Score
6.52
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTATTAAATGCCAACAAGATCAATTGCCTGCGTGTTGATGCTTTTCAAGATCTGCACAACTTGAATCTCCTATCTTTATATGACAACAAGCTTCAGACCATTGCAAAAGGCACCTTTTCACCTCTACGTGCAATTCAGACCTT
Seq A exon
GCATTTGGCTCAGAACCCATTTATCTGTGACTGCCATCTGAAGTGGCTGGCGGATTATCTTCATACAAACCCCATTGAGACCAGTGGTGCCCGCTGCACCAGCCCCCGCCGTCTGGCAAACAAAAGGATCGGCCAGATCAAAAGCAAGAAATTCCGCTGCTCAG
Seq C2 exon
GCACTGAAGATTACAGATCCAAATTAAGTGGTGACTGCTTTGCAGATTTGGCTTGCCCTGAGAAATGTCGCTGTGAAGGGACCACAGTGGACTGCTCCAATCAGAAACTCAACAAAATTCCTGATCACATCCCACAGTACACAGCAGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014419-'14-31,'14-28,15-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(78.7=100)
A:
PF138551=LRR_8=PD(11.5=12.5)
C2:
PF0146213=LRRNT=WD(100=54.9),PF127992=LRR_4=PU(2.4=2.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCGTGTTGATGCTTTTC
R:
ACTGTGGGATGTGATCAGGAA
Band lengths:
256-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]