MmuEX6017599 @ mm9
Exon Skipping
Gene
ENSMUSG00000031558 | Slit2
Description
slit homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315205]
Coordinates
chr5:48610901-48616042:+
Coord C1 exon
chr5:48610901-48611044
Coord A exon
chr5:48611156-48611319
Coord C2 exon
chr5:48615892-48616042
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTGTGTTTCTGAAAGGCA
3' ss Score
6.11
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTATTGAATGCCAACAAGATAAACTGCCTTCGGGTAGATGCTTTTCAGGACCTGCACAACTTGAACCTTCTCTCCTTATATGACAATAAGCTTCAGACGGTTGCCAAGGGCACCTTCTCAGCCCTCAGAGCCATCCAAACTAT
Seq A exon
GCATTTGGCCCAGAATCCTTTCATTTGTGACTGCCATCTCAAGTGGCTAGCGGATTATCTCCACACCAACCCAATTGAGACCAGCGGTGCCCGTTGCACCAGCCCCCGCCGCCTGGCAAACAAAAGAATTGGACAGATCAAAAGCAAGAAATTCCGTTGTTCAG
Seq C2 exon
GTACAGAAGATTATCGATCAAAATTAAGTGGAGACTGCTTTGCAGACTTGGCTTGTCCTGAGAAGTGTCGCTGTGAAGGGACCACAGTAGACTGCTCCAATCAAAGACTCAACAAAATCCCTGACCATATTCCCCAGTACACAGCAGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031558-'14-16,'14-14,15-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(78.7=100)
A:
PF138551=LRR_8=PD(11.5=12.5)
C2:
PF0146213=LRRNT=WD(100=54.9),PF138551=LRR_8=PU(5.0=5.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTGCACAACTTGAACCT
R:
GCTCTGCTGTGTACTGGGGAA
Band lengths:
246-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: