MmuEX6017599 @ mm10
Exon Skipping
Gene
ENSMUSG00000031558 | Slit2
Description
slit homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315205]
Coordinates
chr5:48219662-48224803:+
Coord C1 exon
chr5:48219662-48219805
Coord A exon
chr5:48219917-48220080
Coord C2 exon
chr5:48224653-48224803
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTGTGTTTCTGAAAGGCA
3' ss Score
6.11
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTATTGAATGCCAACAAGATAAACTGCCTTCGGGTAGATGCTTTTCAGGACCTGCACAACTTGAACCTTCTCTCCTTATATGACAATAAGCTTCAGACGGTTGCCAAGGGCACCTTCTCAGCCCTCAGAGCCATCCAAACTAT
Seq A exon
GCATTTGGCCCAGAATCCTTTCATTTGTGACTGCCATCTCAAGTGGCTAGCGGATTATCTCCACACCAACCCAATTGAGACCAGCGGTGCCCGTTGCACCAGCCCCCGCCGCCTGGCAAACAAAAGAATTGGACAGATCAAAAGCAAGAAATTCCGTTGTTCAG
Seq C2 exon
GTACAGAAGATTATCGATCAAAATTAAGTGGAGACTGCTTTGCAGACTTGGCTTGTCCTGAGAAGTGTCGCTGTGAAGGGACCACAGTAGACTGCTCCAATCAAAGACTCAACAAAATCCCTGACCATATTCCCCAGTACACAGCAGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031558-'27-33,'27-26,30-33=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(78.7=100)
A:
PF138551=LRR_8=PD(11.5=12.5)
C2:
PF0146213=LRRNT=WD(100=54.9),PF138551=LRR_8=PU(5.0=5.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTGCACAACTTGAACCT
R:
GCTCTGCTGTGTACTGGGGAA
Band lengths:
246-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types