RnoEX6042598 @ rn6
Exon Skipping
Gene
ENSRNOG00000003840 | Slit2
Description
slit guidance ligand 2 [Source:RGD Symbol;Acc:69310]
Coordinates
chr14:66922362-66927186:-
Coord C1 exon
chr14:66927043-66927186
Coord A exon
chr14:66926768-66926931
Coord C2 exon
chr14:66922362-66922512
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTGTGTTTCTGAAAGGCA
3' ss Score
6.11
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTATTGAATGCCAACAAGATAAACTGCCTTCGGGTAGATGCTTTTCAGGACCTGCACAACTTGAACCTTCTCTCCTTATACGACAATAAGCTTCAGACTGTTGCCAAGGGCACCTTCTCAGCTCTCAGAGCCATCCAAACTAT
Seq A exon
GCATTTGGCCCAGAATCCTTTCATTTGTGACTGCCATCTCAAGTGGCTAGCGGATTATCTCCACACCAACCCAATTGAGACCAGCGGTGCCCGTTGCACCAGTCCCCGCCGCCTGGCTAACAAAAGAATTGGACAGATCAAAAGCAAGAAATTCCGTTGTTCAG
Seq C2 exon
GTACAGAAGATTATCGATCAAAATTAAGTGGAGACTGCTTTGCAGACTTGGCTTGTCCTGAAAAATGTCGCTGTGAAGGGACCACAGTAGACTGCTCCAATCAAAAACTCAACAAAATCCCAGACCATATTCCCCAGTACACAGCAGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003840-'17-22,'17-19,18-22=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(78.7=100)
A:
PF138551=LRR_8=PD(11.5=12.5)
C2:
PF0146213=LRRNT=WD(100=54.9),PF138551=LRR_8=PU(5.0=5.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTGCACAACTTGAACCT
R:
GCTCTGCTGTGTACTGGGGAA
Band lengths:
246-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]