DreEX6031583 @ danRer10
Exon Skipping
Gene
ENSDARG00000004246 | slit2
Description
slit homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-3]
Coordinates
chr1:23172104-23176943:+
Coord C1 exon
chr1:23172104-23172247
Coord A exon
chr1:23174108-23174271
Coord C2 exon
chr1:23176793-23176943
Length
164 bp
Sequences
Splice sites
3' ss Seq
ATTTTAATTCTCTTTTTCAGTCA
3' ss Score
9.43
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATTGCTGAATGCGAACAAGATCAATTGTTTGCGTGTAGATTCTTTCCAAGACCTGCAGAATCTGAATCTTCTGTCGCTTTATGACAACAAACTTCAGACCATCGCAAAGGGAACTTTCTCTTCTCTCAGAGCTATCCAAACCCT
Seq A exon
TCATCTGGCCCAGAACCCCTTCATGTGTGACTGCCATTTGAAGTGGTTAGCAGATTACCTGCAAGACAACCCTATTGAGACCAGTGGAGCTCGGTGCACCAGTCCCCGGCGCCTTGCTAACAAACGTATTGGCCAGATCAAGAGCAAAAAGTTCCGCTGTTCAG
Seq C2 exon
GCGTAGAAGACTACCGCTCAAAACTAGGTGGGGATTGCTTTGCTGATTTGGCCTGTCCAGAGAAATGTCGATGTGAAGGAACCACAGTGGACTGCTCTGGACAAAAGCTCACCAAGATCCCAGACCACATCCCTCAGTATACAGCAGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004246-'17-18,'17-15,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=14.3),PF127992=LRR_4=PU(62.5=61.2)
A:
PF127992=LRR_4=PD(35.4=30.4)
C2:
PF0146213=LRRNT=WD(100=54.9),PF138551=LRR_8=PU(5.0=5.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAATGCGAACAAGATCA
R:
GCTTTTGTCCAGAGCAGTCCA
Band lengths:
250-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]