BtaEX6030650 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005108 | SLIT2
Description
slit homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11086]
Coordinates
chr6:41506864-41510484:+
Coord C1 exon
chr6:41506864-41506935
Coord A exon
chr6:41509513-41509676
Coord C2 exon
chr6:41510448-41510484
Length
164 bp
Sequences
Splice sites
3' ss Seq
ACTGCTTGGCTCTCATTCAGTCG
3' ss Score
5.05
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
CACTCTCAACAATAACAACATTACTAGACTTTCTGTGGCAAGTTTCAACCATATGCCTAAACTTAGGACTTT
Seq A exon
TCGACTCCATTCGAACAACCTATATTGTGACTGCCACCTGGCCTGGCTCTCGGACTGGCTGCGCCAAAGGCCTCGGGTGGGCCTCTACACTCAGTGTATGGGGCCATCTCACCTGAGGGGCCACAATGTAGCTGAGGTTCAAAAACGAGAATTTGTCTGCAGCG
Seq C2 exon
GTGGCACTAGTGGTAAAGAACCTGCCTGCCAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005108-'10-13,'10-12,11-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=PD(11.5=12.5),PF0146319=LRRCT=WD(100=44.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACATTACTAGACTTTCTGTGGCA
R:
GCATTGGCAGGCAGGTTCTTT
Band lengths:
93-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]