GgaEX7004022 @ galGal4
Exon Skipping
Gene
ENSGALG00000014419 | SLIT2
Description
slit homolog 2 protein precursor [Source:RefSeq peptide;Acc:NP_001254004]
Coordinates
chr4:74639447-74644581:-
Coord C1 exon
chr4:74644510-74644581
Coord A exon
chr4:74641781-74641944
Coord C2 exon
chr4:74639447-74639585
Length
164 bp
Sequences
Splice sites
3' ss Seq
GTGTCTATCTTCTCATGCAGTCG
3' ss Score
8.25
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
CACTCTCAACAACAATAACATTACTCGACTGTCCGTCGCAAGTTTCAATCATATGCCCAAACTCAGAACTTT
Seq A exon
TCGCCTGCACTCCAACAACCTCTACTGTGACTGCCACCTGGCCTGGCTGTCGGACTGGCTGCGGCAGCGGCCACGTGTAGGCCTCTACACTCAGTGCATGGGCCCAGCACACCTGCGGGGCCATAACGTGGCTGAGGTCCAGAAGCGGGAGTTCGTCTGCAGTG
Seq C2 exon
GTCACCAATCATTTATGGCTCCATCCTGCAGTGTCTTGCATTGTCCTGCTGCATGCACCTGTAGTAACAACATTGTGGACTGTCGTGGGAAAGGCCTTACTGAAATTCCAACAAATCTTCCAGAAACCATTACTGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014419-'7-21,'7-19,8-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=PD(11.5=12.5),PF0146319=LRRCT=WD(100=44.6)
C2:
PF0146213=LRRNT=WD(100=59.6),PF138551=LRR_8=PU(8.2=10.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCAACAACAATAACATTACTCG
R:
ATTTCAGTAATGGTTTCTGGAAGATT
Band lengths:
210-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]