MmuEX6017604 @ mm9
Exon Skipping
Gene
ENSMUSG00000031558 | Slit2
Description
slit homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315205]
Coordinates
chr5:48577735-48582253:+
Coord C1 exon
chr5:48577735-48577806
Coord A exon
chr5:48580668-48580831
Coord C2 exon
chr5:48582242-48582253
Length
164 bp
Sequences
Splice sites
3' ss Seq
CTTTGAACTTCTTCCTTTAGTCG
3' ss Score
6.68
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
CACTCTGAACAATAACAATATTACTAGACTTTCAGTGGCAAGTTTCAACCATATGCCTAAACTTAGGACATT
Seq A exon
TCGACTCCACTCGAACAACTTGTACTGCGACTGCCACCTAGCCTGGCTCTCAGACTGGCTTCGCCAAAGGCCACGGGTGGGCTTGTACACTCAGTGTATGGGCCCATCCCACCTGAGGGGCCACAATGTAGCAGAGGTTCAAAAACGAGAGTTTGTCTGCAGTG
Seq C2 exon
ATGAGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031558-'6-7,'6-6,7-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=PD(11.5=12.5),PF0146319=LRRCT=WD(100=44.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: