DreEX6031587 @ danRer10
Exon Skipping
Gene
ENSDARG00000004246 | slit2
Description
slit homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-3]
Coordinates
chr1:23160257-23163090:+
Coord C1 exon
chr1:23160257-23160328
Coord A exon
chr1:23162427-23162590
Coord C2 exon
chr1:23162958-23163090
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTGCATCTGTCCAGTCG
3' ss Score
6.83
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CACACTGAACAACAACAATATCTCTCGTTTGTCAGTGGCCAGTTTTAACCACATGCCCAAGCTCAGGACATT
Seq A exon
TCGCCTGCACTCTAATAATCTGCTATGTGATTGCAATGTGGCCTGGCTCTCTGATTGGCTGAGACAGAGGCCCCGCCTTGGCCTCTACACACAGTGTATGGCTCCACCCTCCCTTAGGGGCCACAACATCGCAGAGGTTCAGAAGAAAGAGTTTATGTGTACAG
Seq C2 exon
GGCCCCAGTCACACTCATCCTGTAGTGTGCTGCAGTGTCCTGAGCTCTGCACCTGCAGTAATAATGTAGTGGACTGCCGGGGGAAAGGACTTACTGAAATACCCACCAACCTGCCAGAAACTATCACTGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004246-'10-10,'10-8,11-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=PD(11.5=12.5)
C2:
PF0146213=LRRNT=WD(100=62.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGAACAACAACAATATCTCTCG
R:
CTCAGTGATAGTTTCTGGCAGGT
Band lengths:
202-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]