HsaEX6083768 @ hg38
Exon Skipping
Gene
ENSG00000145147 | SLIT2
Description
slit guidance ligand 2 [Source:HGNC Symbol;Acc:HGNC:11086]
Coordinates
chr4:20486200-20490814:+
Coord C1 exon
chr4:20486200-20486271
Coord A exon
chr4:20488819-20488982
Coord C2 exon
chr4:20490803-20490814
Length
164 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTTTTTCTCATTTAGTCG
3' ss Score
8.35
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
CACTCTCAACAATAACAACATTACTAGACTTTCTGTGGCAAGTTTCAACCATATGCCTAAACTTAGGACTTT
Seq A exon
TCGACTGCATTCAAACAACCTGTATTGTGACTGCCACCTGGCCTGGCTCTCCGACTGGCTTCGCCAAAGGCCTCGGGTTGGTCTGTACACTCAGTGTATGGGCCCCTCCCACCTGAGAGGCCATAATGTAGCCGAGGTTCAAAAACGAGAATTTGTCTGCAGTG
Seq C2 exon
ATGAGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145147-'14-23,'14-21,15-23=AN
Average complexity
A_C2
Mappability confidence:
89%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=PD(11.5=12.5),PF0146319=LRRCT=WD(100=44.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains