RnoEX6042594 @ rn6
Exon Skipping
Gene
ENSRNOG00000003840 | Slit2
Description
slit guidance ligand 2 [Source:RGD Symbol;Acc:69310]
Coordinates
chr14:66956524-66961932:-
Coord C1 exon
chr14:66961861-66961932
Coord A exon
chr14:66958009-66958172
Coord C2 exon
chr14:66956524-66956535
Length
164 bp
Sequences
Splice sites
3' ss Seq
AACTCCTTCTTCTCATTTAGTCG
3' ss Score
6.34
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
CACTCTGAACAATAACAATATTACTAGACTTTCAGTGGCAAGTTTCAACCATATGCCTAAACTTAGGACATT
Seq A exon
TCGACTCCACTCCAACAACCTATACTGCGACTGCCACCTGGCCTGGCTCTCGGACTGGCTTCGCCAAAGGCCACGGGTGGGCTTGTACACTCAGTGTATGGGCCCATCCCACCTGAGGGGCCATAATGTAGCAGAGGTTCAAAAACGAGAGTTTGTCTGCAGTG
Seq C2 exon
ATGAGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003840-'9-12,'9-11,10-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=PD(11.5=12.5),PF0146319=LRRCT=WD(100=44.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]