BtaEX6031481 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006837 | UBA6
Description
Bos taurus ubiquitin-like modifier activating enzyme 6 (UBA6), mRNA. [Source:RefSeq mRNA;Acc:NM_001083438]
Coordinates
chr6:85053682-85057160:-
Coord C1 exon
chr6:85056967-85057160
Coord A exon
chr6:85056095-85056222
Coord C2 exon
chr6:85053682-85053769
Length
128 bp
Sequences
Splice sites
3' ss Seq
GATCACCTTCTTTTACCTAGGTT
3' ss Score
7.72
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GTGACCTTCAGATGGCAGTGCTTTCATTTGAAAAAGATGATGATCATAATGGACACATAGATTTCATCACAGCTGCATCAAATCTTCGTGCCAAAATGTATAGTATTGAACCCGCTGACCGTTTGAAAACAAAGCGCATAGCAGGTAGAATTATACCTGCTATAGCAACATCTACTGCTGCAGTCTCTGGCTTG
Seq A exon
GTTGCATTGGAGATGATCAAAGTAGCTGGTGACTATCCATTTGAAGCTTACAAAAATTGTTTCCTTAACTTAGCCATTCCGATCATAGTGTTTACAGAGACATCTGAAGTAAGAAAAACTGAAATCAG
Seq C2 exon
AAATGGAATATCATTTACAATTTGGGACAGATGGACTATACATGGAAAAGAAGATTTCACCCTCTTGGACTTCATAAATGCAGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006837-'31-40,'31-39,32-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(81.2=86.2)
A:
PF0213416=UBACT=PD(15.9=25.6),PF093585=UBA_e1_C=PU(21.1=60.5)
C2:
PF093585=UBA_e1_C=FE(23.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTTCAGATGGCAGTGC
R:
TTTCCATGTATAGTCCATCTGTCCC
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]