RnoEX6042020 @ rn6
Exon Skipping
Gene
ENSRNOG00000021931 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:RGD Symbol;Acc:1308324]
Coordinates
chr14:23552326-23555290:+
Coord C1 exon
chr14:23552326-23552519
Coord A exon
chr14:23553999-23554126
Coord C2 exon
chr14:23555203-23555290
Length
128 bp
Sequences
Splice sites
3' ss Seq
GATCACTTTCTCTTATCTAGGTT
3' ss Score
9.81
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTGACCTTCAGATGGCAGTGCTTTCATTTGAAAAAGATGATGACAGTAATGGACACATAGATTTCATCACAGCTGCTTCCAACCTTCGAGCCAAGATGTATAACATTGAACCAGCTGACCGTTTTAAAACTAAACGCATAGCTGGTAAAATTATACCTGCTATAGCAACATCTACTGCTGCAGTTTCTGGCTTG
Seq A exon
GTTGCCTTGGAGATGATCAAAGTAGCTGGTGGCTATCCCTTTGACGCTTACAAAAACTGTTTCCTTAATTTAGCCATTCCAATAATAGTGTTTACAGAGACATCTGAAGTAAGAAAAACTGAAATCAG
Seq C2 exon
AAACGGAATATCATTTACAATTTGGGACAGGTGGACTGTACATGGAAAAGAAGATTTCACTCTCTCAGATTTCATAAATGCTGTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021931-'38-40,'38-39,40-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(81.2=86.2)
A:
PF0213416=UBACT=PD(15.9=25.6),PF093585=UBA_e1_C=PU(21.1=60.5)
C2:
PF093585=UBA_e1_C=FE(23.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTCAGATGGCAGTGCTT
R:
TCTTTTCCATGTACAGTCCACCT
Band lengths:
243-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]