GgaEX1061515 @ galGal4
Exon Skipping
Gene
ENSGALG00000011762 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr4:51037253-51039582:-
Coord C1 exon
chr4:51039389-51039582
Coord A exon
chr4:51038073-51038200
Coord C2 exon
chr4:51037253-51037340
Length
128 bp
Sequences
Splice sites
3' ss Seq
GTGATTCTTATTTACTGCAGGTT
3' ss Score
8.32
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATGACTTACAAATGAAGCCCATTTCCTTTGAAAAAGATGATGATAGTAACGGGCATATAGATTTCATAACAGCAGCATCAAACTTGCGAGCCAAGATGTACAACATTGAACCAGCAGATAGATTCAAAACAAAGCGCATTGCTGGCAAGATTATTCCTGCAATTGCAACAGCTACTGCTGCAGTTTCAGGGCTG
Seq A exon
GTTGCACTGGAACTCATCAAAGTTGTGGGTGGCTACCCAGTGGATGCTTACAAGAACTGTTTTCTGAACCTAGCCATTCCCATAATGGTCTTTACAGAAACTGCTAAAGTAAGAAGAACTGAAATCAG
Seq C2 exon
AAATGGGATATCATTTACCATCTGGGACAGGTGGACAATTTATGGAAAGGAGGATTTTACTCTGCTGGACTTCATAAATGCTGTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011762-'42-53,'42-51,46-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(81.2=86.2)
A:
PF0213416=UBACT=PD(15.9=25.6),PF093585=UBA_e1_C=PU(21.1=60.5)
C2:
PF093585=UBA_e1_C=FE(23.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGATGATAGTAACGGGCA
R:
TGACAGCATTTATGAAGTCCAGCA
Band lengths:
247-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]