MmuEX6018437 @ mm10
Exon Skipping
Gene
ENSMUSG00000035898 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:MGI Symbol;Acc:MGI:1913894]
Coordinates
chr5:86119333-86122498:-
Coord C1 exon
chr5:86122305-86122498
Coord A exon
chr5:86120528-86120655
Coord C2 exon
chr5:86119333-86119420
Length
128 bp
Sequences
Splice sites
3' ss Seq
AGATCACCTCTCTTATCTAGGTT
3' ss Score
7.23
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTGACCTTCAGATGACAGTGCTTTCATTTGAAAAAGATGATGACCGTAATGGACACATAGATTTCATCACAGCTGCTTCCAACCTTCGAGCCAAAATGTATAGCATTGAACCAGCTGACCGTTTTAAAACTAAACGCATAGCTGGTAAAATTATACCTGCTATAGCAACATCTACTGCTGCAGTTTCTGGCTTG
Seq A exon
GTTGCTTTGGAGATGATCAAGGTAGCTGGTGGCTATCCCTTCGACGCTTACAAAAACTGTTTCCTTAATTTAGCCATTCCAATAATAGTGTTTACAGAGACATCTGAAGTAAGAAAAACTGAAATCAG
Seq C2 exon
AAATGGAATATCATTTACAATTTGGGACAGATGGACTGTACATGGAAAAGAAGATTTCACCCTCTCAGATTTCATAAATGCTGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035898_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(81.2=86.2)
A:
PF0213416=UBACT=PD(15.9=25.6),PF093585=UBA_e1_C=PU(21.1=60.5)
C2:
PF093585=UBA_e1_C=FE(23.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTTCAGATGACAGTGCT
R:
AGGGTGAAATCTTCTTTTCCATGT
Band lengths:
257-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types