DreEX6031156 @ danRer10
Exon Skipping
Gene
ENSDARG00000080019 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr1:19189802-19190392:+
Coord C1 exon
chr1:19189802-19189995
Coord A exon
chr1:19190083-19190210
Coord C2 exon
chr1:19190305-19190392
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTATTATTCATTCCCTTTAGGTG
3' ss Score
11.62
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AGAGACTATGTATGAGTCCGCTGTTCTTCGAAAAGGACGATGACACAAATGGACACATGGATTTTGTAGCATCAGCGTCAGCCCTGCGAGCTCGTATGTACGCCATTGAGGCCGCTGACCGACTACAAACCAAACGAATAGCTGGCAAAATCATCCCTGCGATTGCTACATCTACAGCTGCTGTCGCTGGACTG
Seq A exon
GTGTCGATGGAGTTGATTAAAATTGCTGGCGGTTATGGATTTGAGTTGTTTAAAAACTGCTTCTTCAACCTGGCCATTCCAGTTGTGGTTCTTACAGAAACAGCTCAGGTCAAGAGAACCCAAATCAG
Seq C2 exon
AGATGATATTTCATTTTCTATCTGGGATCGTTGGACCATCTTCGGTCGTGAGGACTTCACCTTATCTGATTTTATTAGTGCCGTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000080019-'31-32,'31-31,32-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(81.2=86.2)
A:
PF0213416=UBACT=PD(15.9=25.6),PF093585=UBA_e1_C=PU(21.1=60.5)
C2:
PF093585=UBA_e1_C=FE(23.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTCCGCTGTTCTTCGAAA
R:
GTGAAGTCCTCACGACCGAAG
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]