GgaEX1061515 @ galGal3
Exon Skipping
Gene
ENSGALG00000011762 | UBA6
Description
NA
Coordinates
chr4:53132792-53135121:-
Coord C1 exon
chr4:53134928-53135121
Coord A exon
chr4:53133612-53133739
Coord C2 exon
chr4:53132792-53132879
Length
128 bp
Sequences
Splice sites
3' ss Seq
GTGATTCTTATTTACTGCAGGTT
3' ss Score
8.32
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATGACTTACAAATGAAGCCCATTTCCTTTGAAAAAGATGATGATAGTAACGGGCATATAGATTTCATAACAGCAGCATCAAACTTGCGAGCCAAGATGTACAACATTGAACCAGCAGATAGATTCAAAACAAAGCGCATTGCTGGCAAGATTATTCCTGCAATTGCAACAGCTACTGCTGCAGTTTCAGGGCTG
Seq A exon
GTTGCACTGGAACTCATCAAAGTTGTGGGTGGCTACCCAGTGGATGCTTACAAGAACTGTTTTCTGAACCTAGCCATTCCCATAATGGTCTTTACAGAAACTGCTAAAGTAAGAAGAACTGAAATCAG
Seq C2 exon
AAATGGGATATCATTTACCATCTGGGACAGGTGGACAATTTATGGAAAGGAGGATTTTACTCTGCTGGACTTCATAAATGCTGTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011762-'31-42,'31-40,34-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(81.2=86.2)
A:
PF0213416=UBACT=PD(15.9=25.6),PF093585=UBA_e1_C=PU(21.1=60.5)
C2:
PF093585=UBA_e1_C=FE(23.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGATGATAGTAACGGGCA
R:
TGACAGCATTTATGAAGTCCAGCA
Band lengths:
247-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]