HsaEX6084575 @ hg19
Exon Skipping
Gene
ENSG00000033178 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:25581]
Coordinates
chr4:68488853-68490905:-
Coord C1 exon
chr4:68490712-68490905
Coord A exon
chr4:68489844-68489971
Coord C2 exon
chr4:68488853-68488940
Length
128 bp
Sequences
Splice sites
3' ss Seq
GATCACCTTCTTTTATCTAGGTT
3' ss Score
8.59
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTGACCTTCAGATGGCAGTGCTTTCATTTGAAAAAGATGATGATCATAATGGACACATAGATTTCATCACAGCTGCATCAAATCTTCGTGCCAAAATGTACAGCATTGAACCAGCTGACCGTTTCAAAACAAAGCGCATAGCTGGTAAAATTATACCTGCTATAGCAACAACCACTGCTACAGTTTCTGGCTTG
Seq A exon
GTTGCCTTGGAGATGATCAAAGTAACTGGTGGCTATCCATTTGAAGCTTACAAAAATTGTTTTCTTAACTTAGCCATTCCAATTGTAGTATTTACAGAGACAACTGAAGTAAGGAAAACTAAAATCAG
Seq C2 exon
AAATGGAATATCATTTACAATTTGGGATCGATGGACCGTACATGGAAAAGAAGATTTCACCCTCTTGGATTTCATAAATGCAGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033178-'40-37,'40-36,42-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(81.2=86.2)
A:
PF0213416=UBACT=PD(15.9=25.6),PF093585=UBA_e1_C=PU(21.1=60.5)
C2:
PF093585=UBA_e1_C=FE(23.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTTCAGATGGCAGTGC
R:
TTTCCATGTACGGTCCATCGA
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)