BtaEX6031873 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010956 | SCARB2
Description
Bos taurus scavenger receptor class B, member 2 (SCARB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102153]
Coordinates
chr6:92797820-92805029:-
Coord C1 exon
chr6:92804978-92805029
Coord A exon
chr6:92802263-92802421
Coord C2 exon
chr6:92797820-92800516
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGCTCCTCTCCGCAGAGT
3' ss Score
12.47
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
TGAAACAGGAAACATTCAAACCCTGGTTTTCCCAGTGATGTATATCAATGAG
Seq A exon
AGTGTTCTCATTGATAAAGAGACTGCAAGTCGACTGAAGTCTGTGATTAACACTACACTGATTGTCACCAACATACCCTACATTATCATGGCACTGGGTGTGTTCTTTGGTCTGATCTTCACCTGGCTTGCGTGCAGAGGACAGGGATCCACAGACGAG
Seq C2 exon
GGAACTGCAGATGAAAGAGCGCCCCTCATACGAACCTAGTCAGACCGTGAGCCGTGCTTGGGGAAGGAAGCATGCGCACTGTTGTGACCTGGGCCACGATGACATGGGGCAACCGTCTGTGTCCTCACGGGCTTGTCGCCTGGTGAGACAGGAGGAGGGCACCCCGTGCCGGCGCTTGACGAGCACCTTCCAGCAGAGGTTCAGGAACAGGCTGACCTAGTTGGCCGTTAGGATCCTGTGGTCCCTGACAGATTGTTTTGTTTTTCGTGTGTCTAGCAAGTATTTAATAAACGCTTGTAATTTTTTGTTATTGTTGGGTGCTGGTAGCTCCAGAATTTTGTGACCACTGTCGTGGTTATAATGTCTTTGCATCACTTGTTAATGCTACTTGGTCTAACCTTATTCAGTACTCTTCATTCACCAGACTTTGTGCTCAGAATACATAAATATTACTTTATGTTGTATTCCTCCATTCATTTCATTCACCAAACAGAAGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010956-'11-15,'11-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(3.8=100)
A:
PF0113016=CD36=PD(10.0=84.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCAAACCCTGGTTTTCCCA
R:
TGTTCCTGAACCTCTGCTGGA
Band lengths:
250-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]