DreEX6013387 @ danRer10
Exon Skipping
Gene
ENSDARG00000098312 | scarb2
Description
scavenger receptor class B, member 2 [Source:ZFIN;Acc:ZDB-GENE-020419-29]
Coordinates
chr5:52209892-52211962:+
Coord C1 exon
chr5:52209892-52209943
Coord A exon
chr5:52210670-52210822
Coord C2 exon
chr5:52211915-52211962
Length
153 bp
Sequences
Splice sites
3' ss Seq
TACTTTTTACATTTTTCCAGACA
3' ss Score
7.53
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
TAACACAAAATTTCTCAATGAGACTATTTTCCCCATTATGTACGTCAATGAG
Seq A exon
ACAGCAACTATTGATGATGAGTCTGCAGCCCAGATGAGGATGCTCCTGTTAATTGTAACAGTGGTATCCAACTTTCCAGTCATCATTTTGGCATTGGGGGTGATTTTACTTGTAGTCCTTATATTCCTCGTCTGCAGAAACCGCCAGAGAAAG
Seq C2 exon
AATGAAGTAAAACGTATTGATTTTACTGAAGCTTTTCATTCTTTTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098312-'17-18,'17-15,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(3.7=100),PF151021=TMEM154=PU(10.8=55.6)
A:
PF0113016=CD36=PD(9.9=88.2),PF151021=TMEM154=FE(53.8=100),PF153451=TMEM51=PU(40.0=62.7),PF122733=RCR=PU(30.4=47.1)
C2:
PF151021=TMEM154=FE(16.1=100),PF153451=TMEM51=FE(18.8=100),PF122733=RCR=FE(19.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTCAATGAGACTATTTTCCCCA
R:
AGCAAAAGAATGAAAAGCTTCAGT
Band lengths:
90-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]