RnoEX0078367 @ rn6
Exon Skipping
Gene
ENSRNOG00000002225 | Scarb2
Description
scavenger receptor class B, member 2 [Source:RGD Symbol;Acc:621882]
Coordinates
chr14:17111851-17115963:+
Coord C1 exon
chr14:17111851-17111902
Coord A exon
chr14:17113554-17113712
Coord C2 exon
chr14:17115318-17115963
Length
159 bp
Sequences
Splice sites
3' ss Seq
ACTATTTCTCCTCCTTCCAGAGT
3' ss Score
10.07
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGAAACGGGAAACATTAGGACTATGGTTTTCCCAGTGATGTATCTCAATGAG
Seq A exon
AGTGTTCTCATTGACAAAGAGACTGCAAGTCAACTGAAGTCTGTGATTAACACAACTTTGATTGTCACCAACATACCCTACATCATCATGGCACTGGGTGTGTTCTTTGGCTTGATTTTCACGTGGCTGGCGTGTCGAGGACAGGGGTCTACGGATGAG
Seq C2 exon
GGAACTGCAGATGAAAGGGCACCCCTCATACGGACCTAATGGGACTTACCTGTTGCCTGAGCTTGGTGAGAGAATGTGAGAACTGACCTGACCTGGACCAGGACAGGGAAAAGCCTGCATCCTCACGGGCTCCTGGCCTGTCAAGAAGGGAGTGAAGCCGCAGCACTGGCACGCGAGAAGACCCTCCTGGACAGAGGGGACCGAGCAGGTGACATGGCTGGCAATTACGCTTTATAAAATCATGTCTCTGAAACTGTGTCAATGTGTCTTAGGGAGTATTTAATAAATTGTGTAGAAACCTTTTGTGATTGGGCTCTGGGAGCTGTGGGGATTTTGTAACCCCTGTTGTAGATACAGTGTCTGAGTCACTTGTTAATGTTAACTTGGCCTGACCCGATTCAGTATGCCTCACTCTCCAAACTTTGTGTTTAAAATATGTATGCGTTTCTGTTCTTGTTCTCCGTTCACCTCCTTACGAAGAAAGATGTGGTTACCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002225-'13-20,'13-19,14-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.583
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(3.8=100)
A:
PF0113016=CD36=PD(10.0=84.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACGGGAAACATTAGGACT
R:
CCTCTGTCCAGGAGGGTCTTC
Band lengths:
249-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]