HsaEX6084937 @ hg38
Exon Skipping
Gene
ENSG00000138760 | SCARB2
Description
scavenger receptor class B member 2 [Source:HGNC Symbol;Acc:HGNC:1665]
Coordinates
chr4:76158733-76166301:-
Coord C1 exon
chr4:76166250-76166301
Coord A exon
chr4:76163225-76163383
Coord C2 exon
chr4:76158733-76161751
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTATTTTCTTGCCTCTCCAGAGT
3' ss Score
9.63
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
TGAAACGGGAGACATTAGAACCATGGTTTTCCCAGTGATGTACCTCAATGAG
Seq A exon
AGTGTTCACATTGATAAAGAGACGGCGAGTCGACTGAAGTCTATGATTAACACTACTTTGATCATCACCAACATACCCTACATCATCATGGCGCTGGGTGTGTTCTTTGGTTTGGTTTTTACCTGGCTTGCATGCAAAGGACAGGGATCCATGGATGAG
Seq C2 exon
GGAACAGCGGATGAAAGAGCACCCCTCATTCGAACCTAAACATTGCCTTTGCTTGGTGAAGAAACTGTGTGAGCTGTCCTGACCTGGACGATGACGTGGGGAAACCCTCCACCTCCTTGCAGGCTTGTTGCCTGTTGAAAGAAGGAAAAAGACACGGCGCTGGCAAGTGATAGGAACATTCTGGCCAGAGGTTAAAGAGCAGGCTGACATGGCTGGCCATTAAGCTTTATAAAATCATGTGGGCTCTGAAATTGTTCTTTTATGTGTCTAGCAAGTATTTAATAAACCCTTGTATAGTAATTTTGTTGTTGTTGGGTGCTGGTAGCTCCAGAATTTTGTGACCACTATTGTGGGTAAAATGTCTCTGCATCACTTGTTAATGCTACTGGTCTAACTTCATTCAGTATGCTTCATTCACCGAACTTTGTGCTCAAAATGCGTATATACCATTTTATGTTGTATTCCTCCATTTCACTTGCAAAACAGAAGTAAATAAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138760-'41-55,'41-54,45-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.001 C2=0.071
Domain overlap (PFAM):
C1:
PF0113016=CD36=PD(5.7=27.8),PF0113016=CD36=PU(26.6=94.4)
A:
PF0113016=CD36=PD(10.0=84.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGACATTAGAACCATGGT
R:
GCCTGCTCTTTAACCTCTGGC
Band lengths:
251-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains