HsaEX6084937 @ hg19
Exon Skipping
Gene
ENSG00000138760 | SCARB2
Description
scavenger receptor class B, member 2 [Source:HGNC Symbol;Acc:1665]
Coordinates
chr4:77079890-77087454:-
Coord C1 exon
chr4:77087403-77087454
Coord A exon
chr4:77084378-77084536
Coord C2 exon
chr4:77079890-77082904
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTATTTTCTTGCCTCTCCAGAGT
3' ss Score
9.63
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
TGAAACGGGAGACATTAGAACCATGGTTTTCCCAGTGATGTACCTCAATGAG
Seq A exon
AGTGTTCACATTGATAAAGAGACGGCGAGTCGACTGAAGTCTATGATTAACACTACTTTGATCATCACCAACATACCCTACATCATCATGGCGCTGGGTGTGTTCTTTGGTTTGGTTTTTACCTGGCTTGCATGCAAAGGACAGGGATCCATGGATGAG
Seq C2 exon
GGAACAGCGGATGAAAGAGCACCCCTCATTCGAACCTAAACATTGCCTTTGCTTGGTGAAGAAACTGTGTGAGCTGTCCTGACCTGGACGATGACGTGGGGAAACCCTCCACCTCCTTGCAGGCTTGTTGCCTGTTGAAAGAAGGAAAAAGACACGGCGCTGGCAAGTGATAGGAACATTCTGGCCAGAGGTTAAAGAGCAGGCTGACATGGCTGGCCATTAAGCTTTATAAAATCATGTGGGCTCTGAAATTGTTCTTTTATGTGTCTAGCAAGTATTTAATAAACCCTTGTATAGTAATTTTGTTGTTGTTGGGTGCTGGTAGCTCCAGAATTTTGTGACCACTATTGTGGGTAAAATGTCTCTGCATCACTTGTTAATGCTACTGGTCTAACTTCATTCAGTATGCTTCATTCACCGAACTTTGTGCTCAAAATGCGTATATACCATTTTATGTTGTATTCCTCCATTTCACTTGCAAAACAGAAGTAAATAAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138760-'13-15,'13-13,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(3.8=100)
A:
PF0113016=CD36=PD(10.0=84.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGACATTAGAACCATGGT
R:
GCCTGCTCTTTAACCTCTGGC
Band lengths:
251-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)