MmuEX0041175 @ mm10
Exon Skipping
Gene
ENSMUSG00000029426 | Scarb2
Description
scavenger receptor class B, member 2 [Source:MGI Symbol;Acc:MGI:1196458]
Coordinates
chr5:92441314-92448596:-
Coord C1 exon
chr5:92448545-92448596
Coord A exon
chr5:92446304-92446462
Coord C2 exon
chr5:92441314-92444284
Length
159 bp
Sequences
Splice sites
3' ss Seq
GCTATTTCTCCCCCTTCCAGAGT
3' ss Score
9.4
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TGAAACGGGAGACATCAGGACTATGGTTTTCCCAGTGATGTATCTCAATGAG
Seq A exon
AGTGTCCTCATTGACAAAGAGACCGCAAATCAACTGAAGTCTGTGATTAACACGACTTTGGTTGTCACCAACATACCCTACATCATTATGGCACTGGGTGTGTTCTTTGGCTTGGTTTTCACGTGGCTGGCGTGTCGAGGACAGGGGTCTATGGATGAG
Seq C2 exon
GGAACTGCAGATGAAAGAGCACCCCTCATACGAACCTAATGGGACTTACCTGTTGCCTGAGCTTGGTGAGAGAATGTGAGAGCTGCCCTGACCTGGACCAGGACAGGGGGAACCCTGCATCCTCATGGGCTCCTGGCCTGTCAAGAAGGAAACATAGCACTGGCAAGCGAGAAGCCCCTCCTGGTCAGAGGGAAATGAGCAGGGTGACATGGCTGGCAATTCTGCTTTATAAAATCGTGTCTCTAAAACTGTGTTCATGTGTCTAGGAAGTATTTAATAAACTTGTGTAGAAACTTTTTGTGGTTGGGCCCTGGGAGCTGAGGGGACTTCGTGACCCCCTGTTGTAGATACAATGTCTGAATCGCTTGTTAATGTTCCGTGGCCTGACCCGATTCAGTGTGCTTCATTCTCCAAACTTTGTGTTCAGAGTACGTATGTGTTTCTGTTGTTGTTCCCTGTTCACCTCCTTACACAGAAAGATGTGGTACCCAGGGTAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029426_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(3.8=100)
A:
PF0113016=CD36=PD(10.0=84.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGACATCAGGACTATGGT
R:
ATTTCCCTCTGACCAGGAGGG
Band lengths:
243-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types