GgaEX1051060 @ galGal4
Exon Skipping
Gene
ENSGALG00000011499 | SCARB2
Description
scavenger receptor class B, member 2 [Source:HGNC Symbol;Acc:HGNC:1665]
Coordinates
chr4:49351358-49355016:+
Coord C1 exon
chr4:49351358-49351409
Coord A exon
chr4:49352050-49352208
Coord C2 exon
chr4:49353924-49355016
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCCATCTCTGTCTGCTCCAGAGT
3' ss Score
9.2
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TGAAACGGGCAACATCCGAACACTAATTTTCCCAGTGATGTATATAAATGAG
Seq A exon
AGTGTTCTGATTGATGAAGCATCTGCCAACAAACTCAAGCACGTCCTGCTGGAAGCCAGTGTTGTAACTGGAATCCCTTTTGTAATCATGGCAATAGGAATTGTTTTTGGGATTGTTTTTAGTGTGCTTGTGTGCAGGGCCCAGGGGGCAAGAGAAGAG
Seq C2 exon
AGCACTGAAGAAGAAAGGTCCCCGCTCATCAGGACATAGTAATAGATCTTCTTAAATACGTGAGCTTGGAGAATAAATCATTAGAGCTTACCTAATGTCAGCTACCACTACCCAGTGTTGTCCACTGTGGAGAAACAGTCGTGTCAAGTGTAACATTCAAAGATGGAAGAGAATCTGCACTGTCGTCAGGGGAGGAGACTTTTCTTAGCAGCTAAGTTACAACTACAAAACTACATTTTAAAACTGCTCGAGATCCCGCTTTTTTCAGCCCTGCACTCTCTTGTACCTGCACTGACACTCAGAGACGATCATAACCACTTTACCGGTGAAAATAAAATGGCCTGATTCGTTACAGAAACGACGGGTAACATTTGCAAATGGCCTTAGGAGCGTGGGCTGCAAAGAACCCTTGTAGAGATGCAGCAGGTTCCTGCGTCACTCACACACCTGCCGGTTTCCCGTAGCCTCACTGTTGTGGTTTCTGTAAAGTACTGCGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011499-'14-19,'14-16,15-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.917
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(3.8=100)
A:
PF0113016=CD36=PD(9.9=84.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAACATCCGAACACTAAT
R:
AAAGTCTCCTCCCCTGACGAC
Band lengths:
248-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]