BtaEX6032559 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017480 | PDE6B
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr6:108847183-108849344:+
Coord C1 exon
chr6:108847183-108847266
Coord A exon
chr6:108848362-108848509
Coord C2 exon
chr6:108849283-108849344
Length
148 bp
Sequences
Splice sites
3' ss Seq
GACTTCTGTTTCCTTTCCAGGAG
3' ss Score
11.74
5' ss Seq
AAGGTCTGG
5' ss Score
3.93
Exon sequences
Seq C1 exon
CCAATGATGGACCGGAACAAGGCAGCTGAGCTCCCCAAGCTACAGGTCGGCTTCATCGACTTCGTGTGCACGTTTGTGTACAAG
Seq A exon
GAGTTCTCCCGCTTCCACGAGGAGATCCTGCCCATGTTTGACCGGCTGCAGAACAACAGGAAGGAGTGGAAGGCCTTGGCCGATGAGTACGAAGCCAAGGTGAAGGCCCTGGAGGAGGACCAGAAGAAAGAGACGACGGCCAAGAAAG
Seq C2 exon
TGGGCACAGAAATCTGCAACGGCGGCCCGGCACCCCGGTCTTCTACCTGCCGCATCCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017480-'23-25,'23-24,25-25=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.120 C2=0.350
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(13.2=100)
A:
PF0023314=PDEase_I=PD(9.3=38.0)
C2:
NO
Main Skipping Isoform:
ENSBTAT00000052174fB5103
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGATGGACCGGAACAAGGC
R:
GAGGATGCGGCAGGTAGAAGA
Band lengths:
141-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]