RnoEX0064387 @ rn6
Exon Skipping
Gene
ENSRNOG00000000065 | Pde6b
Description
phosphodiesterase 6B [Source:RGD Symbol;Acc:1311039]
Coordinates
chr14:2328750-2331129:-
Coord C1 exon
chr14:2331046-2331129
Coord A exon
chr14:2329612-2329768
Coord C2 exon
chr14:2328750-2328982
Length
157 bp
Sequences
Splice sites
3' ss Seq
GACTTCTCAGTTCCCTCTAGGAA
3' ss Score
4.93
5' ss Seq
AAGGTCTGG
5' ss Score
3.93
Exon sequences
Seq C1 exon
CCCATGATGGACCGGAACAAAGCAGCTGAGCTCCCCAAGCTACAAGTTGGCTTCATCGACTTCGTATGTACTTTCGTGTACAAG
Seq A exon
GAATTTTCTCGATTTCACGAAGAGATCCTGCCCATGTTTGACCGACTGCAAAATAACAGAAAGGAGTGGAAAGCTCTAGCTGATGAGTATGAGGCCAAAGTCAAGGCACTGGAGGAAGAGAAGAAGAAGGAAGAAGACAGAGTAGCAGCCAAGAAAG
Seq C2 exon
CGGGCACAGAAATTTGCAATGGTGGTCCAGCACCCAAGTCCTCGACCTGCTGTATTCTATAAGCTCTATCTCATGGCTTTGTGTCCCTCCTGCCACTCACCCACTGGGTATGGACTCTGCCTATAGCAGTTTGGTGTAAGATATTAGGAACAGGGGGGAGAAAAAGATCAAACTTTGGATGTTTTGAAACTTTAAAGGTGTTTTTACAAATTAAAACCAACTATGAATAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000065_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.100
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(10.8=100)
A:
PF0023314=PDEase_I=PD(7.6=35.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGACCGGAACAAAGCAG
R:
CCAAAGTTTGATCTTTTTCTCCCCC
Band lengths:
258-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]